PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48778.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 273aa    MW: 31310.1 Da    PI: 5.9866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48778.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lv+ +   G ++W+t+++  g+ R++k+c++rw +yl
       KHN48778.1 14 RGPWTIEEDRKLVNFIINNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding506.8e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++++ +++  lG++ W++Ia++++ gRt++++k++w++
       KHN48778.1  67 RGGFTEMEEDQIMQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      788*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.342961IPR017930Myb domain
SuperFamilySSF466892.06E-2811108IPR009057Homeodomain-like
SMARTSM007172.8E-91363IPR001005SANT/Myb domain
PfamPF002493.3E-121461IPR001005SANT/Myb domain
CDDcd001671.23E-61661No hitNo description
PROSITE profilePS5129423.46662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2465116IPR009057Homeodomain-like
SMARTSM007177.2E-1466114IPR001005SANT/Myb domain
PfamPF002493.7E-1467110IPR001005SANT/Myb domain
CDDcd001674.19E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDRKLVNFII NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEMEEDQIMQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT KIKKRLKLLG  120
LDPLTLKPAE QKEKSGDDIK NIELQPNTSK GSEQGVENKS LDMHGTREVA KTEGKIEENE  180
VTWDDTTGIF NNYEMLCSQL DLGSWVSQET KSSTSSYCSS SFSLDDSSNH SVGESSYLQE  240
NSLQQWVDDL DSILSWDNFN SLEKDFLFLD NRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-141AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631010.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A0B2SV490.0A0A0B2SV49_GLYSO; Myb-related protein 315
TrEMBLI1K1340.0I1K134_SOYBN; Uncharacterized protein
STRINGGLYMA05G06410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-73myb domain protein 40
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]